ARES-HADES-BORG
Theory
Introduction to ARES
Introduction to BORG
FFT normalization in ARES/BORG
User documentation
Release notes
Building
Inputs
Outputs
Running the executables
Postprocessing
Extra modules
Clusters
Developer documentation
Development with git
Code architecture
Code architecture
ARES modules
Code tutorials
Contributing to this documentation
Copyright and authorship
Python reference documentation
PyBORG root module
Cosmology computations
Likelihood and associated structures
Samplers and sampler algorithms
BORG forward model
Standard BORG forward models
Velocity field computations
ARES-HADES-BORG
Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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S
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T
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U
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V
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W
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X
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Z
A
a2com() (aquila_borg.cosmo.Cosmology method)
a2z() (aquila_borg.cosmo.Cosmology method)
accumulateAdjoint() (aquila_borg.forward.BORGForwardModel method)
addModel() (aquila_borg.forward.ChainForwardModel method)
adjointModel_v2() (aquila_borg.forward.BORGForwardModel method)
AltairMetaSampler (class in aquila_borg.samplers)
aquila_borg (module)
aquila_borg.cosmo (module)
aquila_borg.forward (module)
aquila_borg.forward.models (module)
aquila_borg.forward.velocity (module)
aquila_borg.likelihood (module)
aquila_borg.samplers (module)
B
BaseForwardModel (class in aquila_borg.forward)
BaseLikelihood (class in aquila_borg.likelihood)
BiasModelParamsSampler (class in aquila_borg.samplers)
Borg2Lpt (class in aquila_borg.forward.models)
borgConsole() (in module aquila_borg)
BORGForwardModel (class in aquila_borg.forward)
BorgLpt (class in aquila_borg.forward.models)
BorgLptNGP_Double (class in aquila_borg.forward.models)
BorgLptNGP_Quad (class in aquila_borg.forward.models)
BorgLptOpenMP (class in aquila_borg.forward.models)
BorgLptSmoothNGP_Quad (class in aquila_borg.forward.models)
BoxModel (class in aquila_borg.forward)
buildDefaultChain() (in module aquila_borg)
C
ChainForwardModel (class in aquila_borg.forward)
CICModel (class in aquila_borg.forward.velocity)
ClassCosmo (class in aquila_borg.cosmo)
clearAdjointGradient() (aquila_borg.forward.BORGForwardModel method)
com2a() (aquila_borg.cosmo.Cosmology method)
com2comph() (aquila_borg.cosmo.Cosmology method)
comph2com() (aquila_borg.cosmo.Cosmology method)
computeAdjointModel() (aquila_borg.forward.velocity.VelocityBase method)
Console (class in aquila_borg)
console() (in module aquila_borg)
copy() (aquila_borg.forward.BoxModel method)
CosmologicalParameters (class in aquila_borg.cosmo)
Cosmology (class in aquila_borg.cosmo)
CosmoPower (class in aquila_borg.cosmo)
D
d_plus() (aquila_borg.cosmo.Cosmology method)
default() (aquila_borg.cosmo.CosmologicalParameters method)
Downgrade (class in aquila_borg.forward.models)
dtr() (aquila_borg.cosmo.Cosmology method)
dtv() (aquila_borg.cosmo.Cosmology method)
E
EisensteinHu (class in aquila_borg.forward.models)
F
fnl() (aquila_borg.cosmo.CosmologicalParameters property)
forwardModel() (aquila_borg.forward.BORGForwardModel method)
forwardModel_v2() (aquila_borg.forward.BORGForwardModel method)
ForwardModelLikelihood3d (class in aquila_borg.likelihood)
G
GaussianLinear (class in aquila_borg.likelihood)
GaussianPassthrough (class in aquila_borg.likelihood)
generateMockData() (aquila_borg.likelihood.Likelihood3d method)
GenericBiasSampler (class in aquila_borg.samplers)
get_Tk() (aquila_borg.cosmo.ClassCosmo method)
getAdjointModel() (aquila_borg.forward.BORGForwardModel method)
getBoxModel() (aquila_borg.forward.BORGForwardModel method)
getCommunicator() (aquila_borg.forward.BORGForwardModel method)
(aquila_borg.likelihood.Likelihood3d method)
getCosmology() (aquila_borg.cosmo.ClassCosmo method)
getDensityFinal() (aquila_borg.forward.BORGForwardModel method)
getForwardModel() (aquila_borg.likelihood.ForwardModelLikelihood3d method)
getModelParam() (aquila_borg.forward.BORGForwardModel method)
getMPISlice() (aquila_borg.forward.BORGForwardModel method)
getNumberOfParticles() (aquila_borg.forward.ParticleBasedForwardModel method)
getOutputBox() (aquila_borg.forward.velocity.VelocityBase method)
getOutputBoxModel() (aquila_borg.forward.BORGForwardModel method)
getOutputMPISlice() (aquila_borg.forward.BORGForwardModel method)
getParticlePositions() (aquila_borg.forward.ParticleBasedForwardModel method)
getParticleVelocities() (aquila_borg.forward.ParticleBasedForwardModel method)
getPreferredInput() (aquila_borg.forward.BORGForwardModel method)
getPreferredOutput() (aquila_borg.forward.BORGForwardModel method)
getVelocityField() (aquila_borg.forward.velocity.VelocityBase method)
gplus() (aquila_borg.cosmo.Cosmology method)
gradientLikelihood() (aquila_borg.likelihood.Likelihood3d method)
H
h() (aquila_borg.cosmo.CosmologicalParameters property)
HadesLinear (class in aquila_borg.forward.models)
HadesLog (class in aquila_borg.forward.models)
HermiticEnforcer (class in aquila_borg.forward.models)
HMCDensitySampler (class in aquila_borg.samplers)
holdParticles() (aquila_borg.forward.BORGForwardModel method)
I
initializeLikelihood() (aquila_borg.likelihood.Likelihood3d method)
items() (aquila_borg.likelihood.LikelihoodInfo method)
L
L() (aquila_borg.forward.BoxModel property)
Likelihood3d (class in aquila_borg.likelihood)
LikelihoodInfo (class in aquila_borg.likelihood)
listModels() (in module aquila_borg.forward.models)
logLikelihood() (aquila_borg.likelihood.Likelihood3d method)
M
MarkovSampler (class in aquila_borg.samplers)
MarkovState (class in aquila_borg.likelihood)
memoryReport() (in module aquila_borg)
ModelParamsSampler (class in aquila_borg.samplers)
N
N() (aquila_borg.forward.BoxModel property)
n_s() (aquila_borg.cosmo.CosmologicalParameters property)
name() (aquila_borg.forward.PreferredIO property)
newArray1d() (aquila_borg.likelihood.MarkovState method)
newArray3d() (aquila_borg.likelihood.MarkovState method)
newArray3d_slab() (aquila_borg.likelihood.MarkovState method)
newForwardModel() (aquila_borg.likelihood.MarkovState method)
newModel() (in module aquila_borg.forward.models)
newScalar() (aquila_borg.likelihood.MarkovState method)
Ntot() (aquila_borg.forward.BoxModel property)
numBiasParams() (aquila_borg.likelihood.GaussianLinear method)
(aquila_borg.likelihood.GaussianPassthrough method)
(aquila_borg.likelihood.PoissonPowerLaw method)
O
omega_b() (aquila_borg.cosmo.CosmologicalParameters property)
omega_k() (aquila_borg.cosmo.CosmologicalParameters property)
omega_m() (aquila_borg.cosmo.CosmologicalParameters property)
omega_q() (aquila_borg.cosmo.CosmologicalParameters property)
omega_r() (aquila_borg.cosmo.CosmologicalParameters property)
outputToFile() (aquila_borg.Console method)
P
ParticleBasedForwardModel (class in aquila_borg.forward)
ParticleBasedModel (class in aquila_borg.forward.velocity)
PoissonPowerLaw (class in aquila_borg.likelihood)
power() (aquila_borg.cosmo.CosmoPower method)
PreferredIO (class in aquila_borg.forward)
Primordial (class in aquila_borg.forward.models)
print_debug() (aquila_borg.Console method)
print_error() (aquila_borg.Console method)
print_std() (aquila_borg.Console method)
print_warning() (aquila_borg.Console method)
printStackTrace() (aquila_borg.Console method)
PyBaseSampler (class in aquila_borg.samplers)
S
sample() (aquila_borg.samplers.MarkovSampler method)
setAdjointRequired() (aquila_borg.forward.BORGForwardModel method)
setCosmoParams() (aquila_borg.forward.BORGForwardModel method)
setModelParams() (aquila_borg.forward.BORGForwardModel method)
setName() (aquila_borg.forward.BORGForwardModel method)
setStepNotifier() (aquila_borg.forward.ParticleBasedForwardModel method)
setTransfer() (aquila_borg.forward.models.Transfer method)
setupInverseCIC() (aquila_borg.forward.models.Transfer method)
setupSharpKcut() (aquila_borg.forward.models.Transfer method)
setVerboseLevel() (aquila_borg.Console method)
SICModel (class in aquila_borg.forward.velocity)
Sigma8Sampler (class in aquila_borg.samplers)
slice_sampler() (in module aquila_borg.samplers)
sum_mnu() (aquila_borg.cosmo.CosmologicalParameters property)
T
Transfer (class in aquila_borg.forward.models)
U
updateMetaParameters() (aquila_borg.likelihood.Likelihood3d method)
V
VelocityBase (class in aquila_borg.forward.velocity)
volume() (aquila_borg.forward.BoxModel property)
W
w() (aquila_borg.cosmo.CosmologicalParameters property)
wprime() (aquila_borg.cosmo.CosmologicalParameters property)
X
xmin() (aquila_borg.forward.BoxModel property)
Z
z2a() (aquila_borg.cosmo.Cosmology method)